Scientists are still working out what the foreign cells may be doing in their host. In some cases they may differentiate into fully functional tissue cells in the host. For example, genetically female heart cells (presumably from the mother) have been found in males. In other cases these foreign cells may trigger immune disorders later in life, when the immune system of the host finally recognizes and attacks the foreign cells. Diseases that may have a microchimerism link include several autoimmune inflammatory diseases of connective tissue (scleroderma, lupus erythematosus, and rheumatoid arthritis), and perhaps even Type 1 diabetes, a disease characterized by poor regulation of blood sugar.
Reference: Nelson, J.Lee. Your Cells are My Cells. Scientific American Feb. 2008, pp. 72-79.
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